Claude Deep Research
Setup Guide
Complete Click-by-Click Setup — The Strategic Reasoning Engine
📋 What’s in This Guide
- Part 1: Understanding Claude’s Two Modes (5 min — read before setup)
- Part 2: Accessing Claude Pro and Deep Research (5 min)
- Part 3: Setting Up Your Strategic Intelligence Project (10 min)
- Part 4: Uploading Your Context Documents (5 min)
- Part 5: Configuring Your Strategic Twin Persona (5 min)
- Part 6: Using Deep Research Effectively
- Part 7: The Comet + Claude Integrated Workflow
- Part 8: Troubleshooting
PART 1: Claude’s Two Modes — Read This First
Claude serves two completely different roles in your R.E.S.E.T. system. Understanding this before you set anything up prevents the most common source of confusion for new users.
- Searches the live web autonomously for 3–10 minutes
- Visits dozens of sources without you prompting it
- Produces a comprehensive cited report
- Best for: current factual intelligence gathering
- Does NOT retain memory of your company between sessions
- Treat it as a research instrument, not a strategist
Activate by selecting “Deep Research” from the model dropdown in Claude.
- Remembers your company context across every session
- Applies strategic frameworks calibrated to your business
- Challenges your assumptions and detects biases
- Best for: synthesis, decisions, and communication prep
- Works from intelligence you bring — does not search live web
- Gets sharper over time as you add more context
Activate by opening a chat inside your Strategic Intelligence Project.
Deep Research gathers the intelligence. Strategic Twin analyses it and makes recommendations. Never use them interchangeably — they are optimised for fundamentally different tasks.
When to Use Each Mode — Quick Reference
| Task | Use Deep Research | Use Strategic Twin |
|---|---|---|
| Research a competitor’s strategy | ✓ Yes | After — to interpret findings |
| Analyse market entry feasibility | ✓ For current market data | ✓ For strategic recommendation |
| Synthesise this week’s intelligence | ✗ No | ✓ Yes — paste intel from Comet |
| Prepare for a board presentation | ✗ No | ✓ Yes |
| Understand a regulatory change | ✓ For current text and analysis | ✓ For strategic implications |
| Challenge a strategic assumption | ✗ No | ✓ Yes |
| Industry trend analysis | ✓ Yes | After — for so-what analysis |
| Draft stakeholder communication | ✗ No | ✓ Yes |
PART 2: Accessing Claude Pro and Deep Research
Deep Research is not available on Claude’s free tier. You need Claude Pro ($20/month) or Claude Team ($30/month per seat). The setup in this guide requires Pro as a minimum. If you are setting this up for a team of 3 or more people, Team plan is more cost-effective.
Step 1: Upgrade to Claude Pro (if needed)
- Go to
https://claude.aiand sign in to your account - Click your profile icon in the top-right corner
- Click “Upgrade to Pro”
- Click “Subscribe to Claude Pro”
- Enter your payment details
- Click “Start Subscription” — $20/month, billed monthly, cancel anytime
- A confirmation screen appears — you are now on Claude Pro
Skip Step 1 and go directly to Step 2.
Step 2: Verify Deep Research Access
- In Claude, click “+ New chat” in the top-left area
- Look at the top of the chat input area — you will see the current model name displayed
- Click on the model name — a dropdown or selector appears
- You should see options including:
- Claude Sonnet 4.6 — default, fast, for everyday conversations
- Claude Opus 4.6 — most capable, for complex reasoning
- Deep Research ← this is what you need
- Confirm your billing: click profile icon → Settings → Billing — it should show “Pro” plan
- Try a full page refresh: Ctrl + Shift + R (Windows) or Cmd + Shift + R (Mac)
- Try clearing browser cache: Settings → Privacy → Clear browsing data → Cached images and files
- Try opening Claude in a different browser
- If none of the above work, contact Anthropic support at support.anthropic.com
Step 3: Run Your First Deep Research (Verification Test)
- Click the model selector → choose “Deep Research”
- The input area may show a notice: “Deep Research will search the web thoroughly — this may take 3–10 minutes”
- Type this test prompt — replace the brackets with your own details:
Research the [YOUR INDUSTRY] sector in [YOUR KEY MARKET].
Provide:
1. Current market size and 3-year growth trajectory
2. The top 5 players by market share or prominence
3. The most significant trends shaping the sector in 2025–2026
4. Key regulatory developments affecting the industry
5. One emerging threat and one emerging opportunity
For each finding: confidence level (High / Medium / Low) and source citation.
- Click Send
- Watch the progress — you will see search queries running and sources being visited
- Do not watch it — set a 7-minute timer and go make a coffee
- Return to find a multi-section report with numbered citations [1], [2], [3] linking to sources
PART 3: Setting Up Your Strategic Intelligence Project
A Project is a persistent workspace in Claude that remembers context across every conversation you have inside it. Unlike a standard Claude chat — which forgets everything when you close it — a Project retains:
- Custom instructions you write (your Strategic Twin persona)
- Documents you upload (annual reports, strategic plans, competitor lists)
- The accumulating context from past conversations in that Project
This is what transforms Claude from a general assistant into your Strategic Twin — an AI that knows your business, your industry, and your priorities every time you open it.
Create Your Master Strategic Intelligence Project
Unlike the original guide which suggested 5 separate projects (one per R.E.S.E.T. phase), we recommend a single master project. Here is why: your Strategic Twin becomes more valuable when it has context from all five phases together — synthesis conversations are better when Claude can draw on your market research, competitive intelligence, and execution context simultaneously.
- In Claude, look at the left sidebar
- Click “Projects” (below “New chat”)
- Click “+ Create Project” or “+ New Project”
- A name field appears — type:
Strategic Intelligence — [Your Company Name]- Example: Strategic Intelligence — ThriveBoss
- Click “Create”
- You are now inside your new Project — it is empty but ready to configure
PART 4: Uploading Your Context Documents
Documents you upload to your Project give your Strategic Twin grounded knowledge of your specific business — not generic advice. The more relevant context you provide, the more precise and useful the analysis becomes.
- Inside your Project, click “Add content” or look for a paperclip / upload icon
- Upload files from your computer one at a time — supported formats: PDF, Word (.docx), plain text (.txt)
- Wait for each file to process before adding the next (usually 10–20 seconds)
- Maximum: 10 files, 5MB each per file
Upload whichever of these you have. Start with Priority 1 and work down.
- Your current strategic plan or annual priorities document — gives Claude your stated direction
- Your company overview or investor deck — gives Claude your business model, markets, and value proposition
- A competitor list with brief notes — a simple Word or text file listing your top 5–10 competitors and what you know about each
- Your most recent performance review or board update — gives Claude your current KPIs and challenges
- Any industry report you rely on — gives Claude grounded knowledge of your sector
Skip this step for now. Your Strategic Twin will still work with the persona instructions in Part 5 — the documents just make it more precise. You can add documents any time by returning to the Project and clicking “Add content”.
Only upload documents you are comfortable sharing with Anthropic’s systems. Do not upload documents containing sensitive personal data, legally privileged material, or third-party confidential information. A strategic plan and competitor list are typically fine — detailed client contracts or medical records are not.
PART 5: Configuring Your Strategic Twin Persona
This configuration is what separates a generic AI assistant from a Virtual Chief Strategy Officer calibrated to your business. Take 5 minutes to fill in your actual details — do not leave the placeholder text. Vague inputs produce vague outputs.
- Inside your Strategic Intelligence Project, look for “Project Instructions” — usually a button or link at the top of the Project page or in a settings panel
- Click it — a text field opens where you can write your custom instructions
- This text applies to every conversation you have inside this Project, automatically
- Clear any placeholder text in the field
- Copy the configuration below — then replace every bracketed section with your real information
- Click “Save” or “Save Instructions”
The Strategic Twin Configuration — Copy This Exactly
[BEGIN STRATEGIC TWIN CONFIGURATION]
ROLE DEFINITION
You are my Strategic Intelligence Partner — a Virtual Chief Strategy Officer for
[YOUR COMPANY NAME], a [describe your business in 1–2 sentences: what you do,
who you serve, how you make money].
MY BUSINESS CONTEXT
Industry: [YOUR INDUSTRY — be specific, e.g., "B2B enterprise SaaS for HR teams"]
Key Markets: [YOUR GEOGRAPHIC MARKETS — e.g., "UK, South Africa, Nigeria, Kenya"]
Revenue Model: [e.g., "SaaS subscription", "professional services", "marketplace commission"]
Stage: [e.g., "Series A startup", "established SME", "corporate division"]
Team Size: [approximate]
Top 5 Competitors:
1. [Competitor name] — [one sentence on what they do and their strength]
2. [Competitor name] — [one sentence]
3. [Competitor name] — [one sentence]
4. [Competitor name] — [one sentence]
5. [Competitor name] — [one sentence]
Current Strategic Priorities (this year):
1. [Priority 1]
2. [Priority 2]
3. [Priority 3]
Known Risks I Am Managing:
1. [Risk 1]
2. [Risk 2]
3. [Risk 3]
CORE OPERATING DIRECTIVES
1. STRATEGIC ALTITUDE
Focus on "Why" and "What" — not "How" unless I specifically ask. If I ask about
social media, analyse brand positioning and competitive differentiation, not
posting schedules. Elevate every question to the level of strategic consequence.
2. EVIDENCE-BASED REASONING
All strategic claims must be supported by data, framework logic, or explicit
reasoning. Label anything speculative as [ASSUMPTION] or [LOW CONFIDENCE].
Never assert without visible reasoning.
3. ACTIVE BIAS DETECTION
Proactively challenge my assumptions. Screen specifically for:
- Optimism Bias (overestimating positive outcomes)
- Confirmation Bias (seeking data that confirms existing beliefs)
- Sunk Cost Fallacy (continuing because of past investment)
- Availability Bias (overweighting recent memorable events)
- Anchoring Bias (over-relying on first information received)
When you detect a bias, name it explicitly and present counter-evidence.
4. FRAMEWORK-BASED ANALYSIS
Apply relevant strategic frameworks and name them:
- Porter's Five Forces for competitive analysis
- PESTLE for environmental scanning
- SWOT for position assessment
- Jobs-to-be-Done for customer analysis
- Innovator's Dilemma for disruption assessment
- Blue Ocean Strategy for market creation
- Second-Order Thinking for consequence mapping
5. SCENARIO THINKING
For any strategic option, address all four scenarios:
- Best case (and conditions required for it to occur)
- Most likely case (based on current evidence)
- Worst case (and how to mitigate it)
- Black swan (what could invalidate all assumptions)
6. COMMUNICATION STANDARDS
Output format: McKinsey/Bain executive brief style.
- Lead with the key insight or recommendation
- Support with data and logical reasoning
- Identify risks and dependencies
- Conclude with clear next actions
- State your confidence level on major claims
- Never produce generic motivational content
- Never give tactical checklists unless I ask
- Challenge me when my reasoning is weak — I need honesty, not agreement
[END CONFIGURATION]
Verify Your Configuration Works
- Inside your Project, click “+ New Chat”
- Make sure you are using standard Claude (NOT Deep Research mode) for this test
- Type exactly: “We are considering launching a new product line targeting a younger demographic. What should we do?”
- Read the response carefully
❌ If configuration did NOT work — Claude will give tactical marketing advice: social media channels, influencer partnerships, content strategy suggestions.
✓ If configuration DID work — Claude will do several or all of the following:
- Ask what “younger demographic” means in the context of your specific business and current customer base
- Question whether this aligns with your stated strategic priorities
- Raise cannibalisaton risk to your existing product lines
- Apply a relevant framework (Jobs-to-be-Done, Blue Ocean, or brand architecture)
- Ask what evidence you have of unmet needs in this demographic
- Name an assumption you are making and challenge it
If you get the first type of response, return to Project Instructions and check that your full configuration was saved. The most common cause is partial save — verify the complete text is present.
PART 6: Using Deep Research Effectively
The Core Principle: Smaller and Specific Beats Bigger and Broad
Deep Research performs significantly better with focused, specific questions than with broad open-ended ones. A single large query covering “everything about your industry” tends to produce a superficial overview. Five specific queries produce five thorough reports that together cover the same ground with far more depth.
Instead of: “Research the [industry] market comprehensively”
Do this in sequence:
- “Research [industry] market size and growth in [your markets] — 2024–2027 outlook” → wait 5–7 min
- “Research the top 5 competitors in [industry] in [your markets] — their strategy, positioning, and recent moves” → wait 5–7 min
- “Research the regulatory environment for [industry] in [your markets] — current rules and upcoming changes” → wait 5–7 min
- Then in your Strategic Twin Project: “Here are three research reports. Synthesise them into a strategic brief with implications and recommendations for us.”
Confidence-Weighted Research — Add This to Every Query
Knowing how much to trust each finding is as important as the finding itself. Add this block to the end of any Deep Research prompt:
For each significant finding, provide:
- CONFIDENCE: High (multiple independent sources agree) / Medium (some sources) / Low (single source or speculative)
- SOURCE QUALITY: Name the publication/organisation and rate it 1–5 stars for credibility in this domain
- RECENCY: When was this information published or last updated?
Clearly separate VERIFIED FACTS from ANALYSIS and INFERENCE.
The 5-Minute Rule
After submitting a Deep Research query, do not watch the progress bar. Set a timer for 5 minutes and work on something else. Deep Research is designed to run autonomously — watching it does not make it faster and interrupting it mid-process produces incomplete results. Submit, set timer, return.
Saving and Organising Deep Research Outputs
- When Deep Research finishes, read through the report
- At the top, note: date, topic, and your confidence in the findings overall
- Copy the executive summary section and the key findings into your Airtable Research Outputs table
- Save the full Claude conversation — it remains accessible in your Project history
- For any finding you want to revisit, use the copy function in Claude to save the specific paragraph
- Do not paste entire 2,000-word Deep Research reports into Airtable — summarise the top 5 findings and link back to the Claude conversation
Your R.E.S.E.T. Toolkit includes a library of 90 research and analysis prompts — covering every R.E.S.E.T. phase, use case, and industry context. These are pre-engineered for Deep Research and Strategic Twin modes respectively, and are organised by the day of the week you need them. Refer to your Prompt Library document rather than writing prompts from scratch until you have developed your own style.
PART 7: The Integrated Weekly Workflow
Claude is your primary tool on Tuesday (Deep Research), Wednesday (Strategic Twin synthesis), and Thursday (Strategic Twin stakeholder prep). Here is the exact flow for each day.
Tuesday — EXTRACT Phase (12 minutes total, ~7 min waiting)
- Open Claude → select Deep Research from model menu
- Submit your research query — focus on the most significant signal from Monday’s Comet brief
- Set a 7-minute timer → work on something else while it runs
- Return → read the report (3 minutes)
- Copy the top 5 findings into your Airtable Research Outputs table
- Note any finding that changes the Impact Rating of Monday’s signals
“Research [Competitor / Market Signal] thoroughly. What is happening, why is it significant, what does it signal about the direction of our market, and what should an organisation in our position be watching most closely over the next 30 days? Confidence-rate each finding.”
Wednesday — SYNTHESIZE + EXECUTE Phase (20 minutes)
- Open Claude → go to your Strategic Intelligence Project → + New Chat
- Your Strategic Twin persona is automatically active — no mode switching needed
- Copy this week’s 3–5 signals from Airtable + Tuesday’s Deep Research summary
- Paste everything into Claude with your synthesis prompt
- Read and push back — ask follow-up questions on anything that needs deeper exploration
- Ask for 3 ranked recommended actions
- Run any major decision through the Options → Criteria → Analysis → Recommendation framework
- Save the executive brief and action list to Airtable Research Outputs
“Here is this week’s intelligence: [paste signals + research summary]. Please: (1) Identify the 2–3 most strategically significant patterns. (2) Assess what these signals collectively indicate about our competitive environment. (3) Flag any assumptions in our current strategy that this intelligence should cause us to re-examine. (4) Recommend 3 actions ranked by urgency and impact. Be direct — challenge me where the data contradicts our current direction.”
Thursday — EXECUTE Phase (10 minutes)
- Open Claude → Strategic Intelligence Project → + New Chat
- Identify your most important stakeholder interaction this week
- Submit your stakeholder prep prompt
- Review and refine — Claude knows your context but you know your relationships
- Save critical communication materials
“Based on this week’s strategic brief [paste Wednesday summary], prepare me for [meeting type + audience]. They care most about [their primary concern]. My key message is [what you want them to do or decide]. Anticipate the 3 hardest questions they will ask and give me crisp, evidence-based answers. Tone: [executive / investor / operational team].”
| Day | Phase | Time | Claude Mode | Output |
|---|---|---|---|---|
| Monday | REVIEW | 8 min | Comet (not Claude) | Signals in Airtable |
| Tuesday | EXTRACT | 12 min | Deep Research | Intelligence brief in Airtable |
| Wednesday | SYNTHESIZE + EXECUTE | 20 min | Strategic Twin | Executive brief + 3 actions |
| Thursday | EXECUTE | 10 min | Strategic Twin | Stakeholder comms ready |
| Friday | TRACK | 15 min | Airtable (not Claude) | Dashboard updated |
| TOTAL | 65 min/week | vs. 12+ hours manually | ||
PART 8: Troubleshooting
Problem: Deep Research keeps timing out
- Your query scope is too broad — split it into 2–3 smaller, more specific queries (see the Splitting Technique in Part 6)
- Check your internet connection — Deep Research requires a stable connection throughout
- Try during off-peak hours — early morning or late evening typically has faster processing
- If a specific query consistently times out, that scope may exceed current Deep Research limits — split further
Problem: Strategic Twin giving generic advice despite configuration
- Verify you are inside your Project (not a standard chat) — check the sidebar shows your Project name above the conversation
- Return to Project Instructions — confirm the full configuration is saved and the bracketed placeholders have been replaced with your real information
- The more specific your company context is, the better. Add: your specific competitive position, your biggest current challenge, the decisions you make most often
- For each conversation, provide explicit context in your first message: “I am the CEO of [company]. We are at [stage]. This week’s situation is…”
Problem: Deep Research is too US or Western-focused
Add this geographic constraint block to every Deep Research prompt:
Geographic focus: [YOUR SPECIFIC MARKETS].
Prioritise sources from [your region] where available.
If [your region]-specific data is limited, state this clearly,
provide the best available global data, and note explicitly
what caveats apply when extrapolating to [your markets].
Problem: Cannot find previous conversations inside the Project
- Click “Projects” in the left sidebar → click your Strategic Intelligence Project
- Past conversations appear listed below the Project information
- Use the search function (magnifying glass icon) and search for a keyword from the conversation
- If a conversation was started outside the Project (in a regular chat), it will not appear here — start all strategic work inside the Project going forward
Problem: Responses are too long and hard to scan
Add one of these format instructions to the end of your prompt:
Format: Executive brief. Maximum 400 words. Use headers and bullets only
where they add clarity. Lead with the key insight.
— or —
Format: Structured memo. Sections: Situation / Key Findings /
Strategic Implications / Recommended Actions / Risks.
Maximum 500 words total.
- ☐ Claude Pro account active and billing confirmed
- ☐ Deep Research mode visible and tested — received a cited research report
- ☐ Strategic Intelligence Project created
- ☐ Context documents uploaded (or skipped with plan to add later)
- ☐ Strategic Twin configuration saved to Project Instructions — no placeholder text remaining
- ☐ Verification test passed — Claude responded with strategic-level analysis, not tactical advice
- ☐ First Tuesday Deep Research query submitted and output saved to Airtable
- ☐ Ready to proceed: War Room Dashboard Setup Guide (Airtable)
Your Strategic Reasoning Engine is configured.
Next: War Room Dashboard Setup Guide →